J. Jun

Journal Articles:

J. Jun and I.I. Mandoiu and C.E. Nelson, Identification of mammalian orthologs using local synteny, BMC Genomics 10:630, 2009, pdf preprint, publisher url, bibtex

J. Jun and P. Ryvkin and E. Hemphill and I.I. Mandoiu and C.E. Nelson, The Birth of New Genes by RNA- and DNA-Mediated Duplication during Mammalian Evolution, Journal of Computational Biology 16, pp. 1429-1444, 2009, publisher url, bibtex

K. Apichonbancha and B. Dasgupta and J. Jun and I.I. Mandoiu and E. Mendonca , A Review of the Primer Approximation Multiplex PCR (PAMP) Technique for Detecting Large Scale Cancer Genomic Lesions, Current Bioinformatics 4, pp. 1-7, 2009, publisher url, bibtex

P. Ryvkin and J. Jun and E. Hemphill and C.E. Nelson, Duplication Mechanism and Disruptions in Flanking Regions Influence the Fate of Mammalian Gene Duplicates, Journal of Computational Biology 16, pp. 1253-1266, 2009, publisher url, bibtex

Conference Articles:

J. Jun and P. Ryvkin and E. Hemphill and I.I. Mandoiu and C.E. Nelson, Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events During Mammalian Evolution, Proc. 6th Annual RECOMB Satellite Workshop on Comparative Genomics, pp. 40-54, 2008, pdf preprint, publisher url, bibtex

P. Ryvkin and J. Jun and E. Hemphill and C.E. Nelson, Duplication Mechanism and Disruptions in Flanking Regions Influence the Fate of Mammalian Gene Duplicates, Proc. 6th Annual RECOMB Satellite Workshop on Comparative Genomics, pp. 26-39, 2008, publisher url, bibtex

B. Dasgupta and J. Jun and I.I. Mandoiu, Primer Selection Methods for Detection of Genomic Inversions and Deletions via PAMP, Proc. 6th Asia-Pacific Bioinformatics Conference, pp. 353-362, 2008, pdf preprint, publisher url, bibtex

Ph.D. Thesis:

J. Jun, Reconstruction and Analysis of Gene Family Evolution in Mammals, University of Connecticut, Storrs, CT, May, 2010, pdf preprint, url, bibtex